Index

A

AbstractHierarchy (C++ class) AbstractHierarchy::add_datum (C++ function) AbstractHierarchy::clone (C++ function) AbstractHierarchy::conditional_pred_lpdf (C++ function) AbstractHierarchy::conditional_pred_lpdf_grid (C++ function) AbstractHierarchy::deep_clone (C++ function) AbstractHierarchy::get_card (C++ function) AbstractHierarchy::get_data_idx (C++ function) AbstractHierarchy::get_id (C++ function) AbstractHierarchy::get_like_lpdf (C++ function) AbstractHierarchy::get_likelihood (C++ function) AbstractHierarchy::get_log_card (C++ function) AbstractHierarchy::get_mutable_prior (C++ function) AbstractHierarchy::get_prior (C++ function) AbstractHierarchy::get_state_proto (C++ function) AbstractHierarchy::initialize (C++ function) AbstractHierarchy::is_conjugate (C++ function) AbstractHierarchy::is_dependent (C++ function) AbstractHierarchy::is_multivariate (C++ function) AbstractHierarchy::like_lpdf_grid (C++ function) AbstractHierarchy::prior_pred_lpdf (C++ function) AbstractHierarchy::prior_pred_lpdf_grid (C++ function) AbstractHierarchy::remove_datum (C++ function) AbstractHierarchy::sample_full_cond (C++ function), [1] AbstractHierarchy::sample_prior (C++ function) AbstractHierarchy::set_dataset (C++ function) AbstractHierarchy::set_hypers_from_proto (C++ function) AbstractHierarchy::set_state_from_proto (C++ function) AbstractHierarchy::set_updater (C++ function) AbstractHierarchy::update_hypers (C++ function) AbstractHierarchy::update_ss (C++ function) AbstractHierarchy::write_hypers_to_proto (C++ function) AbstractHierarchy::write_state_to_proto (C++ function) AbstractHierarchy::~AbstractHierarchy (C++ function) AbstractLikelihood (C++ class) AbstractLikelihood::add_datum (C++ function) AbstractLikelihood::clear_summary_statistics (C++ function) AbstractLikelihood::clone (C++ function) AbstractLikelihood::cluster_lpdf_from_unconstrained (C++ function), [1] AbstractLikelihood::get_unconstrained_state (C++ function) AbstractLikelihood::is_dependent (C++ function) AbstractLikelihood::is_multivariate (C++ function)

AbstractLikelihood::lpdf (C++ function) AbstractLikelihood::lpdf_grid (C++ function) AbstractLikelihood::remove_datum (C++ function) AbstractLikelihood::set_dataset (C++ function) AbstractLikelihood::set_state_from_proto (C++ function) AbstractLikelihood::set_state_from_unconstrained (C++ function) AbstractLikelihood::update_summary_statistics (C++ function) AbstractLikelihood::write_state_to_proto (C++ function) AbstractLikelihood::~AbstractLikelihood (C++ function) AbstractMixing (C++ class) AbstractMixing::get_id (C++ function) AbstractMixing::get_mass_existing_cluster (C++ function) AbstractMixing::get_mass_new_cluster (C++ function) AbstractMixing::get_mixing_weights (C++ function) AbstractMixing::get_mutable_prior (C++ function) AbstractMixing::get_num_components (C++ function) AbstractMixing::initialize (C++ function) AbstractMixing::is_conditional (C++ function) AbstractMixing::is_dependent (C++ function) AbstractMixing::set_covariates (C++ function) AbstractMixing::set_num_components (C++ function) AbstractMixing::set_state_from_proto (C++ function) AbstractMixing::update_state (C++ function) AbstractMixing::write_state_to_proto (C++ function) AbstractPriorModel (C++ class) AbstractPriorModel::clone (C++ function) AbstractPriorModel::deep_clone (C++ function) AbstractPriorModel::get_hypers_proto (C++ function) AbstractPriorModel::get_mutable_prior (C++ function) AbstractPriorModel::lpdf (C++ function) AbstractPriorModel::lpdf_from_unconstrained (C++ function), [1] AbstractPriorModel::sample_proto (C++ function) AbstractPriorModel::set_hypers_from_proto (C++ function) AbstractPriorModel::update_hypers (C++ function) AbstractPriorModel::write_hypers_to_proto (C++ function) AbstractPriorModel::~AbstractPriorModel (C++ function) AbstractUpdater (C++ class) AbstractUpdater::compute_posterior_hypers (C++ function) AbstractUpdater::draw (C++ function) AbstractUpdater::is_conjugate (C++ function) AbstractUpdater::save_posterior_hypers (C++ function) AbstractUpdater::~AbstractUpdater (C++ function)

B

BaseAlgorithm (C++ class) BaseAlgorithm::eval_lpdf (C++ function) BaseAlgorithm::get_id (C++ function) BaseAlgorithm::is_conditional (C++ function) BaseAlgorithm::lpdf_from_state (C++ function) BaseAlgorithm::read_params_from_proto (C++ function) BaseAlgorithm::requires_conjugate_hierarchy (C++ function) BaseAlgorithm::run (C++ function) BaseCollector (C++ class) BaseCollector::collect (C++ function) BaseCollector::finish_collecting (C++ function) BaseCollector::get_next_state (C++ function) BaseCollector::get_size (C++ function) BaseCollector::reset (C++ function) BaseCollector::start_collecting (C++ function) BaseHierarchy (C++ class) BaseHierarchy::add_datum (C++ function) BaseHierarchy::BaseHierarchy (C++ function) BaseHierarchy::clone (C++ function) BaseHierarchy::conditional_pred_lpdf (C++ function) BaseHierarchy::conditional_pred_lpdf_grid (C++ function) BaseHierarchy::deep_clone (C++ function) BaseHierarchy::get_card (C++ function) BaseHierarchy::get_data_idx (C++ function) BaseHierarchy::get_like_lpdf (C++ function) BaseHierarchy::get_likelihood (C++ function) BaseHierarchy::get_log_card (C++ function) BaseHierarchy::get_marg_lpdf (C++ function) BaseHierarchy::get_mutable_prior (C++ function) BaseHierarchy::get_prior (C++ function) BaseHierarchy::get_state (C++ function) BaseHierarchy::get_state_proto (C++ function) BaseHierarchy::initialize (C++ function) BaseHierarchy::is_conjugate (C++ function) BaseHierarchy::is_dependent (C++ function) BaseHierarchy::is_multivariate (C++ function) BaseHierarchy::like_lpdf_grid (C++ function) BaseHierarchy::prior_pred_lpdf (C++ function) BaseHierarchy::prior_pred_lpdf_grid (C++ function) BaseHierarchy::remove_datum (C++ function) BaseHierarchy::sample_full_cond (C++ function), [1] BaseHierarchy::sample_prior (C++ function) BaseHierarchy::set_dataset (C++ function) BaseHierarchy::set_hypers_from_proto (C++ function) BaseHierarchy::set_likelihood (C++ function) BaseHierarchy::set_prior (C++ function) BaseHierarchy::set_state_from_proto (C++ function) BaseHierarchy::set_updater (C++ function) BaseHierarchy::update_hypers (C++ function) BaseHierarchy::write_hypers_to_proto (C++ function) BaseHierarchy::write_state_to_proto (C++ function) BaseHierarchy::~BaseHierarchy (C++ function) BaseLikelihood (C++ class) BaseLikelihood::add_datum (C++ function) BaseLikelihood::BaseLikelihood (C++ function) BaseLikelihood::clear_data (C++ function) BaseLikelihood::clone (C++ function) BaseLikelihood::cluster_lpdf_from_unconstrained (C++ function), [1] BaseLikelihood::get_card (C++ function) BaseLikelihood::get_data_idx (C++ function) BaseLikelihood::get_dataset (C++ function) BaseLikelihood::get_log_card (C++ function) BaseLikelihood::get_state (C++ function) BaseLikelihood::get_unconstrained_state (C++ function)

BaseLikelihood::lpdf_grid (C++ function) BaseLikelihood::remove_datum (C++ function) BaseLikelihood::set_dataset (C++ function) BaseLikelihood::set_state (C++ function) BaseLikelihood::set_state_from_proto (C++ function) BaseLikelihood::set_state_from_unconstrained (C++ function) BaseLikelihood::write_state_to_proto (C++ function) BaseLikelihood::~BaseLikelihood (C++ function) BaseMixing (C++ class) BaseMixing::get_mutable_prior (C++ function) BaseMixing::get_num_components (C++ function) BaseMixing::get_state (C++ function) BaseMixing::get_state_proto (C++ function) BaseMixing::initialize (C++ function) BaseMixing::set_covariates (C++ function) BaseMixing::set_num_components (C++ function) BaseMixing::write_state_to_proto (C++ function) BasePriorModel (C++ class) BasePriorModel::BasePriorModel (C++ function) BasePriorModel::clone (C++ function) BasePriorModel::deep_clone (C++ function) BasePriorModel::get_hypers (C++ function) BasePriorModel::get_mutable_prior (C++ function) BasePriorModel::initialize (C++ function) BasePriorModel::lpdf_from_unconstrained (C++ function), [1] BasePriorModel::sample_proto (C++ function) BasePriorModel::write_hypers_to_proto (C++ function) BasePriorModel::~BasePriorModel (C++ function) bayesmix (C++ type), [1], [2], [3], [4], [5] bayesmix::append_by_row (C++ function), [1] bayesmix::categorical_rng (C++ function) bayesmix::check_file_is_writeable (C++ function) bayesmix::check_spd (C++ function) bayesmix::cluster_estimate (C++ function) bayesmix::compute_wood_chol_and_logdet (C++ function) bayesmix::gaussian_mixture_dist (C++ function), [1], [2] bayesmix::get_2d_grid (C++ function) bayesmix::multi_normal_diag_rng (C++ function) bayesmix::multi_normal_lpdf_woodbury (C++ function) bayesmix::multi_normal_lpdf_woodbury_chol (C++ function) bayesmix::multi_normal_prec_chol_rng (C++ function) bayesmix::multi_normal_prec_lpdf (C++ function) bayesmix::multi_normal_prec_lpdf_grid (C++ function) bayesmix::multi_student_t_invscale_lpdf (C++ function) bayesmix::multi_student_t_invscale_lpdf_grid (C++ function) bayesmix::posterior_similarity (C++ function) bayesmix::read_eigen_matrix (C++ function) bayesmix::read_proto_from_file (C++ function) bayesmix::Rng (C++ class) bayesmix::Rng::get (C++ function) bayesmix::Rng::Instance (C++ function) bayesmix::Rng::mt (C++ member) bayesmix::Rng::operator= (C++ function) bayesmix::Rng::Rng (C++ function), [1] bayesmix::Rng::seed (C++ function) bayesmix::Rng::~Rng (C++ function) bayesmix::sample_truncated_beta (C++ function) bayesmix::stack_vectors (C++ function) bayesmix::to_eigen (C++ function), [1] bayesmix::to_proto (C++ function), [1] bayesmix::vstack (C++ function) bayesmix::write_matrix_to_file (C++ function) BlockedGibbsAlgorithm (C++ class) BlockedGibbsAlgorithm::get_id (C++ function)

C

ConditionalAlgorithm (C++ class)

ConditionalAlgorithm::is_conditional (C++ function) ConditionalAlgorithm::lpdf_from_state (C++ function)

D

DirichletMixing (C++ class) DirichletMixing::get_id (C++ function) DirichletMixing::get_state_proto (C++ function)

DirichletMixing::is_conditional (C++ function) DirichletMixing::set_state_from_proto (C++ function) DirichletMixing::update_state (C++ function)

F

FAHierarchy (C++ class) FAHierarchy::get_id (C++ function) FAHierarchy::initialize_state (C++ function) FAHierarchy::set_default_updater (C++ function) FALikelihood (C++ class) FALikelihood::clear_summary_statistics (C++ function) FALikelihood::compute_lpdf (C++ function) FALikelihood::is_dependent (C++ function) FALikelihood::is_multivariate (C++ function) FALikelihood::update_sum_stats (C++ function) FAPriorModel (C++ class)

FAPriorModel::get_hypers_proto (C++ function) FAPriorModel::initialize_hypers (C++ function) FAPriorModel::lpdf (C++ function) FAPriorModel::set_hypers_from_proto (C++ function) FAPriorModel::update_hypers (C++ function) FAUpdater (C++ class) FAUpdater::draw (C++ function) FileCollector (C++ class) FileCollector::collect (C++ function) FileCollector::finish_collecting (C++ function) FileCollector::reset (C++ function) FileCollector::start_collecting (C++ function)

L

LaplaceLikelihood (C++ class) LaplaceLikelihood::clear_summary_statistics (C++ function) LaplaceLikelihood::compute_lpdf (C++ function) LaplaceLikelihood::is_dependent (C++ function) LaplaceLikelihood::is_multivariate (C++ function) LaplaceLikelihood::update_sum_stats (C++ function) LapNIGHierarchy (C++ class) LapNIGHierarchy::get_id (C++ function) LapNIGHierarchy::initialize_state (C++ function) LapNIGHierarchy::set_default_updater (C++ function) LinRegUniHierarchy (C++ class)

LinRegUniHierarchy::get_id (C++ function) LinRegUniHierarchy::initialize_state (C++ function) LinRegUniHierarchy::marg_lpdf (C++ function) LinRegUniHierarchy::set_default_updater (C++ function) LogitSBMixing (C++ class) LogitSBMixing::get_acceptance_rates (C++ function) LogitSBMixing::get_id (C++ function) LogitSBMixing::get_state_proto (C++ function) LogitSBMixing::is_conditional (C++ function) LogitSBMixing::is_dependent (C++ function) LogitSBMixing::set_state_from_proto (C++ function) LogitSBMixing::update_state (C++ function)

M

MalaUpdater (C++ class) MalaUpdater::proposal_lpdf (C++ function) MalaUpdater::sample_proposal (C++ function) MarginalAlgorithm (C++ class) MarginalAlgorithm::is_conditional (C++ function) MarginalAlgorithm::lpdf_from_state (C++ function) MemoryCollector (C++ class) MemoryCollector::collect (C++ function) MemoryCollector::finish_collecting (C++ function) MemoryCollector::get_state (C++ function) MemoryCollector::read_from_file (C++ function) MemoryCollector::reset (C++ function) MemoryCollector::start_collecting (C++ function) MemoryCollector::write_to_file (C++ function) MetropolisUpdater (C++ class) MetropolisUpdater::draw (C++ function) MixtureFiniteMixing (C++ class) MixtureFiniteMixing::get_id (C++ function)

MixtureFiniteMixing::get_state_proto (C++ function) MixtureFiniteMixing::is_conditional (C++ function) MixtureFiniteMixing::set_state_from_proto (C++ function) MixtureFiniteMixing::update_state (C++ function) MNIGPriorModel (C++ class) MNIGPriorModel::get_hypers_proto (C++ function) MNIGPriorModel::initialize_hypers (C++ function) MNIGPriorModel::lpdf (C++ function) MNIGPriorModel::set_hypers_from_proto (C++ function) MNIGPriorModel::update_hypers (C++ function) MNIGUpdater (C++ class) MNIGUpdater::compute_posterior_hypers (C++ function) MNIGUpdater::is_conjugate (C++ function) MultiNormLikelihood (C++ class) MultiNormLikelihood::clear_summary_statistics (C++ function) MultiNormLikelihood::compute_lpdf (C++ function) MultiNormLikelihood::is_dependent (C++ function) MultiNormLikelihood::is_multivariate (C++ function) MultiNormLikelihood::update_sum_stats (C++ function)

N

Neal2Algorithm (C++ class) Neal2Algorithm::get_id (C++ function) Neal2Algorithm::requires_conjugate_hierarchy (C++ function) Neal3Algorithm (C++ class) Neal3Algorithm::get_id (C++ function) Neal8Algorithm (C++ class) Neal8Algorithm::get_id (C++ function) Neal8Algorithm::get_n_aux (C++ function) Neal8Algorithm::read_params_from_proto (C++ function) Neal8Algorithm::requires_conjugate_hierarchy (C++ function) Neal8Algorithm::set_n_aux (C++ function) NIGPriorModel (C++ class) NIGPriorModel::get_hypers_proto (C++ function) NIGPriorModel::initialize_hypers (C++ function) NIGPriorModel::lpdf (C++ function) NIGPriorModel::set_hypers_from_proto (C++ function) NIGPriorModel::update_hypers (C++ function) NNIGHierarchy (C++ class) NNIGHierarchy::get_id (C++ function) NNIGHierarchy::initialize_state (C++ function) NNIGHierarchy::marg_lpdf (C++ function) NNIGHierarchy::set_default_updater (C++ function) NNIGUpdater (C++ class) NNIGUpdater::compute_posterior_hypers (C++ function) NNIGUpdater::is_conjugate (C++ function) NNWHierarchy (C++ class)

NNWHierarchy::get_id (C++ function) NNWHierarchy::get_predictive_t_parameters (C++ function) NNWHierarchy::initialize_state (C++ function) NNWHierarchy::marg_lpdf (C++ function) NNWHierarchy::set_default_updater (C++ function) NNWUpdater (C++ class) NNWUpdater::compute_posterior_hypers (C++ function) NNWUpdater::is_conjugate (C++ function) NNxIGHierarchy (C++ class) NNxIGHierarchy::get_id (C++ function) NNxIGHierarchy::initialize_state (C++ function) NNxIGHierarchy::set_default_updater (C++ function) NNxIGUpdater (C++ class) NNxIGUpdater::compute_posterior_hypers (C++ function) NWPriorModel (C++ class) NWPriorModel::get_hypers_proto (C++ function) NWPriorModel::initialize_hypers (C++ function) NWPriorModel::lpdf (C++ function) NWPriorModel::set_hypers_from_proto (C++ function) NWPriorModel::update_hypers (C++ function) NxIGPriorModel (C++ class) NxIGPriorModel::get_hypers_proto (C++ function) NxIGPriorModel::initialize_hypers (C++ function) NxIGPriorModel::lpdf (C++ function) NxIGPriorModel::set_hypers_from_proto (C++ function) NxIGPriorModel::update_hypers (C++ function)

P

PitYorMixing (C++ class) PitYorMixing::get_id (C++ function) PitYorMixing::get_state_proto (C++ function)

PitYorMixing::is_conditional (C++ function) PitYorMixing::set_state_from_proto (C++ function) PitYorMixing::update_state (C++ function)

R

RandomWalkUpdater (C++ class) RandomWalkUpdater::clone (C++ function)

RandomWalkUpdater::proposal_lpdf (C++ function) RandomWalkUpdater::sample_proposal (C++ function)

S

SemiConjugateUpdater (C++ class) SemiConjugateUpdater::draw (C++ function) SplitAndMergeAlgorithm (C++ class) SplitAndMergeAlgorithm::get_id (C++ function) SplitAndMergeAlgorithm::read_params_from_proto (C++ function) SplitAndMergeAlgorithm::requires_conjugate_hierarchy (C++ function) State::BaseState (C++ class) State::BaseState::get_as_proto (C++ function) State::BaseState::get_unconstrained (C++ function) State::BaseState::log_det_jac (C++ function) State::BaseState::set_from_proto (C++ function) State::BaseState::set_from_unconstrained (C++ function) State::BaseState::to_proto (C++ function) State::FA (C++ class)

State::FA::compute_wood_factors (C++ function) State::FA::get_as_proto (C++ function) State::FA::set_from_proto (C++ function) State::MultiLS (C++ class) State::MultiLS::get_as_proto (C++ function) State::MultiLS::get_unconstrained (C++ function) State::MultiLS::log_det_jac (C++ function) State::MultiLS::set_from_proto (C++ function) State::MultiLS::set_from_unconstrained (C++ function) State::UniLS (C++ class) State::UniLS::get_as_proto (C++ function) State::UniLS::get_unconstrained (C++ function) State::UniLS::log_det_jac (C++ function) State::UniLS::set_from_proto (C++ function) State::UniLS::set_from_unconstrained (C++ function)

T

TruncatedSBMixing (C++ class) TruncatedSBMixing::get_id (C++ function) TruncatedSBMixing::get_prior_shape_parameters (C++ function) TruncatedSBMixing::get_state_proto (C++ function)

TruncatedSBMixing::is_conditional (C++ function) TruncatedSBMixing::keep_breaking (C++ function) TruncatedSBMixing::set_state_from_proto (C++ function) TruncatedSBMixing::update_state (C++ function)

U

UniLinRegLikelihood (C++ class) UniLinRegLikelihood::clear_summary_statistics (C++ function) UniLinRegLikelihood::compute_lpdf (C++ function) UniLinRegLikelihood::is_dependent (C++ function) UniLinRegLikelihood::is_multivariate (C++ function) UniLinRegLikelihood::update_sum_stats (C++ function)

UniNormLikelihood (C++ class) UniNormLikelihood::clear_summary_statistics (C++ function) UniNormLikelihood::compute_lpdf (C++ function) UniNormLikelihood::is_dependent (C++ function) UniNormLikelihood::is_multivariate (C++ function) UniNormLikelihood::update_sum_stats (C++ function)